home-learning

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Background

• Many people have time to learn about virus genome at home
• Create a home learning material for bioinformatics beginners

How to Map COVID-19 Spread?

• To run the scripts, copy this tutorial for you first: File > Save a copy in Drive
• Tutorial (5 min)

What is RNA Sequence?

• In this tutorial, we will analyze the RNA sequences of 4 coronaviruses:
  • SRAS-CoV-2 (COVID-19) [MN908947]
  • SARS related coronavirus [AY27411.3]
  • MERS related coronavirus [JX869059.2]
  • Chinese water skink coronavirus [MG600026.1]

How to Download Sequences?

• How to download the RNA sequence data of coronaviruses from public data archive.
• Tutorial (5 min)

How to Calculate GC-Content?

• RNA sequence consists of 4 type of characters (= nucleotides): A & T(U) & G & C. What is the proportion of G & C?
• Tutorial (5 min)

How to Compare Poly-A Length?

• Tutorial

ATGC or AUGC which and why?

• Tutorial

Where are Genes?

• Some sequence regions are translated in proteins. Those regions of the sequence are called open reading frame (ORF).
• Tutorial (10min)

How to Draw Phylogenetic Tree

• Tutorial (10 min)